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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121829255_121830312_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121829255 - 121830312
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
AAATATCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCTTTCTAAATA
Flanking Amino Acid:
NINLGPSGNPHAKPTDFDFL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
67.3
39.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.9
0.49
1
67.1
43.5
Minor 5ss
45.6
-0.5
3.1
66.2
39.2
Minor BPS
59
0.28
1.7
65.77
41.9

Associated Gene:

Gene:
SGK3
Ensembl Gene ID:
ENSAPLG00000015056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015789
121811608 - 121842956
31349