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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121831482_121833450_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121831482 - 121833450
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCGTATTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
FVLDFINGGELFFHLQRERS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76
0.59
1
68.7
41.2
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
SGK3
Ensembl Gene ID:
ENSAPLG00000015056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015789
121811608 - 121842956
31349