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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121833820_121833933_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121833820 - 121833933
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTAAACA
Flanking Amino Acid:
KPENILLDALGHVVLTDFGL
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.9
78
34.2
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
76.8
0.84
1.5
86.93
31.8

Associated Gene:

Gene:
SGK3
Ensembl Gene ID:
ENSAPLG00000015056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015789
121811608 - 121842956
31349