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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121842885_121842972_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
121842885 - 121842972
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTGCTC
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
KFMHDCKKYNDSKQSYAVYR
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.1
53.6
43.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.8
77.8
31
Minor 5ss
42
-0.9
3.3
59.8
44.9
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
MCMDC2
Ensembl Gene ID:
ENSAPLG00000015951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016641
121841734 - 121852497
10764