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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121843104_121843200_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121843104 - 121843200
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTGAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTTGAATT
Flanking Amino Acid:
PIKAAEIFQSVCFVAIKTLS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.2
0.7
0.9
74.2
39.4
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
68
0.64
1.3
81.42
34.1

Associated Gene:

Gene:
MCMDC2
Ensembl Gene ID:
ENSAPLG00000015951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016641
121841734 - 121852497
10764