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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121843261_121843450_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121843261 - 121843450
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATAGTATTAATG
Flanking Amino Acid:
LIEQLQTEAQISILLKPTHL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.1
0.52
1
73.6
37
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
49.6
-0.1
1.7
55.24
40.3

Associated Gene:

Gene:
MCMDC2
Ensembl Gene ID:
ENSAPLG00000015951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016641
121841734 - 121852497
10764