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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121844757_121844934_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121844757 - 121844934
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGAAAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTGAAAG
Flanking Amino Acid:
QEDMKFRVLGDKQIVEMIDA
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
73.4
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.9
0.47
1.2
74.5
39.3
Minor 5ss
33.9
-1.8
3.3
45.4
44
Minor BPS
54.1
-0
1.6
60.82
41.2

Associated Gene:

Gene:
MCMDC2
Ensembl Gene ID:
ENSAPLG00000015951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016641
121841734 - 121852497
10764