Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121846438_121846936_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121846438 - 121846936

Intron Length:

499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCAATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAA

U12 Branch Point Sequence:

TTTGTTTCAATT

Flanking Amino Acid:

VSSVQLCKPNGPSFIGENFK

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

39.5

Major BPS

0.57

1.2

77.7

37.1

Major PPT

70.8

0.47

72.1

38.2

Minor 5ss

33.3

-1.9

2.9

41.4

44.7

Minor BPS

60.8

0.42

1.6

79.05

Associated Gene:

Gene:

MCMDC2

Ensembl Gene ID:

ENSAPLG00000015951

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016641

121841734 - 121852497

10764