About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121847169_121849379_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121847169 - 121849379
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATAATTTAACA
Flanking Amino Acid:
VVTSDTLVIDRLLNYSICLL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.2
0.54
0.8
66.7
35.2
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
61.9
0.37
1.5
69.12
36.4

Associated Gene:

Gene:
MCMDC2
Ensembl Gene ID:
ENSAPLG00000015951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016641
121841734 - 121852497
10764