Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121851291_121851694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121851291 - 121851694

Intron Length:

404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTATGTCCT

5'SS Class:

major

3'SS Sequence:

ATTCATCTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATATTTTTAACG

Flanking Amino Acid:

SNLSASALKLLISLSKAHTK

Intron Amino Acid Position:

591

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.38

1.1

61.3

42.9

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

72.9

0.52

0.8

70.5

35.2

Minor 5ss

45.9

-0.4

2.8

69.8

40.2

Minor BPS

71.7

0.54

1.2

70.07

37.2

Associated Gene:

Gene:

MCMDC2

Ensembl Gene ID:

ENSAPLG00000015951

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016641

121841734 - 121852497

10764