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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121890716_121898018_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121890716 - 121898018
Intron Length:
7303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TCTTTGGTAATT
Flanking Amino Acid:
EDKLAKATRDS*
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
47.9
-0
2.6
74.4
43.5

Associated Gene:

Gene:
COPS5
Ensembl Gene ID:
ENSAPLG00000016013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020007
121889996 - 121907415
17420