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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121895090_121898018_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121895090 - 121898018
Intron Length:
2929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CAACGTTGAATT
Flanking Amino Acid:
EDKLAKATRDSCKTTIEAIH
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.3
0.75
0.9
80.2
37.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
44.9
-0.3
1.8
56.1
40.3

Associated Gene:

Gene:
COPS5
Ensembl Gene ID:
ENSAPLG00000016013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038955
121895005 - 121907866
12862
ENSAPLT00000016717
121894732 - 121908242
13511