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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121901389_121902867_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121901389 - 121902867
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATT
Flanking Amino Acid:
NLGAFRTYPKGYKPPDEGPS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.1
0.63
0.9
75.8
37.9
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
71.8
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
COPS5
Ensembl Gene ID:
ENSAPLG00000016013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038955
121895005 - 121907866
12862
ENSAPLT00000020007
121889996 - 121907415
17420
ENSAPLT00000016717
121894732 - 121908242
13511