Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121904276_121907248_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121904276 - 121907248

Intron Length:

2973

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTGAGAGCG

5'SS Class:

major

3'SS Sequence:

TCACTGCTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

TTTTCCTTCACT

Flanking Amino Acid:

DPGGQALDQGVGRLENAIGW

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.35

1.1

53.2

38.4

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

0.25

54.3

41.2

Minor 5ss

26.6

-2.7

3.2

27.3

37.1

Minor BPS

84.6

1.17

1.6

100

28.8

Associated Gene:

Gene:

COPS5

Ensembl Gene ID:

ENSAPLG00000016013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038955

121895005 - 121907866

12862