About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121916805_121919903_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121916805 - 121919903
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
RQDYRRYLSQKNYLTTGEVD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.5
0.62
0.9
75.1
33.5
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016218
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037021
121911877 - 121931254
19378
ENSAPLT00000016935
121911877 - 121932975
21099