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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121970673_121971602_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121970673 - 121971602
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGTTACTTACTA
Flanking Amino Acid:
AWEEVQQRLLNVCSEALSYF
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
71.8
33.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
88.7
0.87
0.7
81.1
30.9
Minor 5ss
32.2
-2
3.6
42.5
38.7
Minor BPS
60.8
0.33
1.8
73.11
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034429
121967187 - 121985973
18787