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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121972508_121972882_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121972508 - 121972882
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
EDAENLAAAQRDAVDFDVHV
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.6
0.67
0.9
77.6
35.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034429
121967187 - 121985973
18787