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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121973023_121973504_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121973023 - 121973504
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGCGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
EEMSKARPAAKFPEQKLFAA
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
80.8
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.4
0.73
1
87.4
29.7
Minor 5ss
36.9
-1.5
3.2
50.9
40
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034429
121967187 - 121985973
18787