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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121980293_121981234_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121980293 - 121981234
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TACTACTTATTT
Flanking Amino Acid:
NMKLPEQQTEKAEWMTTTCN
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
80.5
0.69
0.7
72.9
31.9
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
57.7
0.32
1.8
74.03
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034429
121967187 - 121985973
18787