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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121984926_121985090_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121984926 - 121985090
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCATCTTAATT
Flanking Amino Acid:
RPFEHIMKRNRSPTIRDMVV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.4
0.53
1
70.7
38.6
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
70.1
0.71
1.2
78.47
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034429
121967187 - 121985973
18787