Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121985243_121985835_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

121985243 - 121985835

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCTCTT

5'SS Class:

weak_major

3'SS Sequence:

CCGGTGTTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

GTGTTTCTACCC

Flanking Amino Acid:

WEVIGDHFNKVGCNPNEDVA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

74.4

41.9

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

62.7

0.29

1.1

60.6

44.8

Minor 5ss

56.3

0.21

2.5

76.3

39.1

Minor BPS

-0.2

1.9

58.79

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022016

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034429

121967187 - 121985973

18787