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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121991417_121994401_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121991417 - 121994401
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTTTTTCC
Flanking Amino Acid:
IRIACIFNIQLERDAYVQAL
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.9
0.76
0.7
80.1
25.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
46.8
-0.2
3.6
78.32
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964