About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_121999300_122000518_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121999300 - 122000518
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
ATTCTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTATTCTTATTT
Flanking Amino Acid:
FLHQEERLDSTQVGEFLGDN
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.8
78.8
33.7
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
63
0.49
1.6
75.9
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964