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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122007001_122010423_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122007001 - 122010423
Intron Length:
3423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TATTGTTTCATT
Flanking Amino Acid:
KPLSDGPPDPKSHELRSKIL
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.1
0.75
0.9
74.5
40
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
52.1
0.15
2.1
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964