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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122011829_122012489_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122011829 - 122012489
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTACAT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGTTATAATT
Flanking Amino Acid:
VQEMVNIVAGDIEGTAESAS
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.2
39.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.4
0.66
0.8
74.7
34.9
Minor 5ss
39.8
-1.1
3.1
56.6
47.5
Minor BPS
59.5
0.38
1.7
79.74
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964