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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122015579_122024165_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122015579 - 122024165
Intron Length:
8587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTCTTTGACT
Flanking Amino Acid:
DEGVQLQIIKALLTAVTSQH
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.1
0.72
0.8
82
34.8
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
83.8
1.15
0.9
93.38
27.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964