Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122024313_122025407_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

122024313 - 122025407

Intron Length:

1095

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGTATG

5'SS Class:

major

3'SS Sequence:

TTCTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TAAGCTTTAATT

Flanking Amino Acid:

IVSTSLDCLQKLIAYGHLTG

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.3

74.4

41.9

Major BPS

87.3

0.93

0.8

36.5

Major PPT

93.2

0.97

0.6

92.2

18.2

Minor 5ss

40.8

-1

2.6

51.1

45.4

Minor BPS

69.2

0.68

1.3

77.68

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001310

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001894

121991144 - 122059107

67964