About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122025565_122029636_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122025565 - 122029636
Intron Length:
4072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCCTAATTAAAT
Flanking Amino Acid:
EEIKAETEKQSPPHGEAKPG
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.1
0.7
0.8
81
31
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
52.3
0.15
1.9
71.49
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964