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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122029668_122058983_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122029668 - 122058983
Intron Length:
29316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATTTCTGTAACT
Flanking Amino Acid:
QLRKACEVALEEIKAETEKQ
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66
39.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
89.1
0.88
0.7
83.7
30.9
Minor 5ss
26.5
-2.7
3.1
32.3
42.4
Minor BPS
70.4
0.72
2
90.07
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001310
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001894
121991144 - 122059107
67964