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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122078587_122080266_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122078587 - 122080266
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTCTGAATT
Flanking Amino Acid:
YRYGPASSTLYVSSGSSMDW
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
71.3
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
84.3
23.5
Minor 5ss
41.3
-1
3
53.4
43.8
Minor BPS
70.8
0.73
1.3
86.15
33.3

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990