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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122080352_122084888_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122080352 - 122084888
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCTCCCCCACA
Flanking Amino Acid:
YETIPNFSCVESAAYNAVNA
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
67.2
0.39
0.8
60.8
28.2
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
48
-0.1
2.3
68.3
43.9

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990