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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122085092_122089988_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122085092 - 122089988
Intron Length:
4897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTCATTC
Flanking Amino Acid:
ANRNWKVKWCDEGASFHPCD
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.6
0.51
0.8
63.7
37.7
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
48.7
-0.1
1.8
58.57
41

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990