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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122090080_122090301_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122090080 - 122090301
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AAACTTACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTAATTAACT
Flanking Amino Acid:
VDGYHFSWTNDRFWRKTRSK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.3
0.32
0.9
60.6
40.3
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
68.9
0.67
1.8
87.66
36.7

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990