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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122090413_122103241_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122090413 - 122103241
Intron Length:
12829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CATACTATGACC
Flanking Amino Acid:
PAFCQWFVKEALQTYQTDPA
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.3
0.73
0.7
77.8
24.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.6
-0
1.7
60.23
39

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003048
122078399 - 122158388
79990