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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122104296_122105240_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122104296 - 122105240
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGAA
5'SS Class:
major
3'SS Sequence:
TCTGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
NYEVYHSLEEIQDWMHHLNK
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.5
34.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
32.6
-2
3.4
39.5
40.8
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990