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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122105356_122108650_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122105356 - 122108650
Intron Length:
3295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTACCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
PFLQQANIQYTILISDLQKA
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
63.6
48.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.4
0.73
0.8
77.9
35.6
Minor 5ss
42.9
-0.8
3.1
55.9
41.9
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990