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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122108776_122122667_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122108776 - 122122667
Intron Length:
13892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GGTTCCTGCACT
Flanking Amino Acid:
ILKAAFNRLKVDLWQPSSTF
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
73.1
0.52
0.9
65.5
34.9
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
59.9
0.39
2
78.89
42.6

Associated Gene:

Gene:
CPA6
Ensembl Gene ID:
ENSAPLG00000002961
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038468
122078399 - 122158388
79990
ENSAPLT00000003048
122078399 - 122158388
79990