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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122210122_122210217_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
122210122 - 122210217
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
TCCTTGTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TTGTCCTTGTCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
50.6
47.7
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
77.3
0.61
0.8
72.2
32.4
Minor 5ss
31.4
-2.1
3
30.3
42.8
Minor BPS
49.6
-0
3.5
77.58
39

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035484
122209928 - 122385035
175108