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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122210417_122257001_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122210417 - 122257001
Intron Length:
46585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TTGTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CCTGAATTAACT
Flanking Amino Acid:
YVGTLEFLVSAFLHRMIQCA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
57.9
41.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.1
0.72
0.9
78
35.5
Minor 5ss
31.7
-2.1
3.3
41.6
45.3
Minor BPS
51
0.11
2
69.75
46.7

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000043503
122210276 - 122384580
174305