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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122243100_122257001_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122243100 - 122257001
Intron Length:
13902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CCTGAATTAACT
Flanking Amino Acid:
LSTYLHCISLAFLHRMIQCA
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.1
0.72
0.9
78
35.5
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
51
0.11
2
69.75
46.7

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003380
122243058 - 122384580
141523