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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122257269_122258327_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122257269 - 122258327
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
AACTGAAGAACA
Flanking Amino Acid:
HEVGTCFLHYKEKFRIYDEY
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
72.4
32.8
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
48.1
-0.2
2.9
69
42.1
Minor BPS
39.8
-0.7
2.1
50.41
40

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523