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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122258433_122261361_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122258433 - 122261361
Intron Length:
2929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTGTTGAACT
Flanking Amino Acid:
KIRTVRTFLLNCMLLGGRKN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.2
0.59
0.9
67.9
38.8
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
62.6
0.47
1.9
83.15
37.9

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523
ENSAPLT00000043503
122210276 - 122384580
174305