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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122295394_122296786_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122295394 - 122296786
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TATTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATCTACACAACT
Flanking Amino Acid:
KVVEKGSNAEMAGLEVGKKI
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
49.4
0.03
2
73.12
43.1

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003380
122243058 - 122384580
141523
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108