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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122301523_122304661_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122301523 - 122304661
Intron Length:
3139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTA
5'SS Class:
major
3'SS Sequence:
TAACTTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
ACRKYRRPMQQDSIQWIYNS
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.6
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79
0.65
0.8
77.6
36.2
Minor 5ss
42.1
-0.9
3.2
58.2
46.4
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523
ENSAPLT00000043503
122210276 - 122384580
174305