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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122305842_122308936_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122305842 - 122308936
Intron Length:
3095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAAAC
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATTTTGTAAAGT
Flanking Amino Acid:
PKGFFSLTAKILEALAKSDE
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.1
37
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.5
0.73
0.9
81.2
36.5
Minor 5ss
32.8
-2
3.1
43.4
43.8
Minor BPS
46.6
-0.1
2.5
73.16
44.2

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523