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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122309099_122311985_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122309099 - 122311985
Intron Length:
2887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTCTCACGT
Flanking Amino Acid:
IYRRISSYKKFSRVLKNRAW
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
67
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.4
0.46
0.9
62.8
38.7
Minor 5ss
38.3
-1.3
3
48.9
46.8
Minor BPS
48.5
-0
2.1
71.07
46.1

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523