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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122312760_122318737_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122312760 - 122318737
Intron Length:
5978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
GTGTGTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATATCTTGATTT
Flanking Amino Acid:
EVETCVCQIDDLLSSITYSP
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
71.9
0.49
1
64.8
41.4
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
54.2
0.21
1.7
72.07
39.1

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523