Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122318918_122321698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

122318918 - 122321698

Intron Length:

2781

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTCATTTTCCAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TCTCGTTTCATT

Flanking Amino Acid:

HDTISNRDSYSDCNSNRNSI

Intron Amino Acid Position:

1076

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

1.1

84.1

30.2

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

71.6

0.49

70.9

38.8

Minor 5ss

49.3

-0

2.5

67.2

43.9

Minor BPS

47.4

-0.1

2.1

68.31

43.6

Associated Gene:

Gene:

PREX2

Ensembl Gene ID:

ENSAPLG00000003294

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036863

122210900 - 122384580

173681

ENSAPLT00000035484

122209928 - 122385035

175108

ENSAPLT00000003380

122243058 - 122384580

141523

ENSAPLT00000043503

122210276 - 122384580

174305