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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122323882_122324228_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122323882 - 122324228
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAGAT
5'SS Class:
major
3'SS Sequence:
TCAATCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACAGAACT
Flanking Amino Acid:
HSCLEHLFGQVDSIVNLLKG
Intron Amino Acid Position:
1136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70.5
33.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
65.2
0.34
1
59.1
36.7
Minor 5ss
39.9
-1.1
3.4
55.6
43.3
Minor BPS
49
0.01
1.9
72.95
43

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681