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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_122325982_122332701_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122325982 - 122332701
Intron Length:
6720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
GTGACCTCAATA
Flanking Amino Acid:
LAQNIRKFVEEVKARILLAL
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.9
42.7
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
31.5
-2.1
2.4
34.7
41
Minor BPS
58.5
0.26
1.6
65.43
40.9

Associated Gene:

Gene:
PREX2
Ensembl Gene ID:
ENSAPLG00000003294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035484
122209928 - 122385035
175108
ENSAPLT00000003380
122243058 - 122384580
141523
ENSAPLT00000043503
122210276 - 122384580
174305
ENSAPLT00000036863
122210900 - 122384580
173681